Year of the Black Rainbow (2010)

  • Made out of Nothing (All That I Am)
  • In the Flame of Error
  • One
  • Pearl of the Stars
  • The Broken
  • World of Lines
  • The Black Rainbow

Neverender: Children of The Fence Edition (2009)

  • The End Complete II: Radio Bye Bye
  • The Willing Well II: From Fear Through the Eyes of Madness
  • Gravemakers & Gunslingers
  • The Light & the Glass
  • No World for Tomorrow
  • The Camper Velorium III: Al the Killer
  • Welcome Home

Good Apollo, I'm Burning Star IV, Volume Two: No World for Tomorrow (2007)

  • The End Complete II: Radio Bye Bye
  • The End Complete III: The End Complete
  • No World for Tomorrow
  • The Running Free
  • The Hound (Of Blood and Rank)
  • Gravemakers & Gunslingers
  • Mother Superior

Kerrang! / XFM UK Acoustic Sessions (2006)

  • A Favor House Atlantic
  • Wake Up
  • The Willing Well IV: The Final Cut

Good Apollo, I'm Burning Star IV, Volume One: From Fear Through the Eyes of Madness (2005)

  • Always & Never
  • Welcome Home
  • Ten Speed (of God's Blood & Burial)
  • Crossing the Frame
  • Once Upon Your Dead Body
  • Wake Up
  • The Lying Lies & Dirty Secrets of Miss Erica Court

Live at the Starland Ballroom (2005)

  • Delirium Trigger
  • A Favor House Atlantic
  • The Crowing
  • Devil in Jersey City
  • Time Consumer
  • Three Evils (Embodied in Love and Shadow)
  • Everything Evil

Live at the Avalon, L.A. (2005)

  • Blood Red Summer
  • In Keeping Secrets of Silent Earth: 3
  • The Willing Well IV: The Final Cut

Live at La Zona Rosa (2004)

  • Devil in Jersey City
  • Intro
  • The Crowing
  • Blood Red Summer
  • Everything Evil

In Keeping Secrets of Silent Earth: 3 (2003)

  • A Favor House Atlantic
  • The Light & the Glass
  • [silence]
  • [silence]
  • [silence]
  • [silence]
  • [silence]

The Second Stage Turbine Blade (2002)

  • Time Consumer
  • Devil in Jersey City
  • Everything Evil
  • Delirium Trigger
  • Hearshot Kid Disaster
  • Junesong Provision
  • Neverender

Delirium Trigger (2000)

  • Delirium Trigger
  • Cassiopeia
  • 33
  • Junesong Provision

Penelope EP (1999)

  • Shameless
  • Camouflage
  • Kinderwhore
  • Godfather's Lollipop